Ekaterina Buyko and Udo Hahn. Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks. Accepted at the EMNLP 2010.
Ekaterina Buyko, Erik Faessler, Joachim Wermter and Udo Hahn. Syntactic Simplification and Semantic Enrichment - Trimming Dependency Graphs for Event Extraction. Computational Intelligence. accepted.
Ekaterina Buyko, Elena Beisswanger and Udo Hahn. The GeneReg Corpus for Gene Expression Regulation Events - An Overview of the Corpus and its In-Domain and Out-of-Domain Interoperability. In Proceedings of the 7thInternational Conference on Language Resources and Evaluation (LREC 2010), May 2010.
Dietrich Rebholz-Schuhmann, Antonio José Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan Kors, David Milward, Peter Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger and Udo Hahn. The CALBC Silver Standard Corpus for Biomedical Named Entities ― A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. In LREC'10 --- Proceedings of the Seventh International Conference Language Resources and Evaluation, 2010.
Dietrich Rebholz-Schumann, Antonio José Jimeno Yepes, Erik. M. Van Mullingen, Ning Kang, Jan Kors, David Milward, Peter Corbett, Ekaterina Buyko, Elena Beisswanger, and Udo Hahn. The CALBC Silver Standard Corpus - Harmonizing Multiple Semantic Annotations in a Large Biomedical Corpus. Journal of Bioinformatics and Computational Biology, Vol. 8, No. 1, 2010.
Ekaterina Buyko, Erik Faessler, Joachim Wermter and Udo Hahn. Event Extraction from Trimmed Dependency Graphs. Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop, 2009.
Udo Hahn, Katrin Tomanek, Ekaterina Buyko, Jung-jae Kim and Dietrich Rebholz-Schuhmann. How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions. Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop, 2009. To appear.
Ekaterina Buyko, Elena Beisswanger and Udo Hahn. Testing Different ACE-Style Feature Sets for the Extraction of Gene Regulation Relations from Medline Abstracts. Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008) , September 2008
Ekaterina Buyko and Udo Hahn. Comparing the Benefits of WordNet's Semantic Similarity with Simple Morpho-Syntactic features for the Resolution of Noun Phrase Coordination Ambiguity. Proceedings of the 22nd International Conference on Computational Linguistics (COLING 2008) , August 2008 Acceptance rate: 27%
Ekaterina Buyko , Christian Chiarcos, Antonio Pareja Lora. Ontology-Based Interface Specifications for an NLP Pipeline Architecture. In Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008) , May 2008.
Udo Hahn, Elena Beisswanger, Ekaterina Buyko , Michael Poprat, Katrin Tomanek, and Joachim Wermter. Semantic annotations for biology - a corpus development initiative at Jena University Language & Information Engineering (JULIE) Lab. In Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008) , May 2008.
Udo Hahn, Ekaterina Buyko , Rico Landefeld, Matthias Mühlhausen, Michael Poprat, Katrin Tomanek and Joachim Wermter. The JULIE Lab UIMA Component Repository - An Overview and Experience Report. UIMA for NLP workshop, LREC 2008 , May 2008.
Ekaterina Buyko and Udo Hahn. Fully Embedded Type Systems for the Semantic Annotation Layer. In Proceedings of First International Conference on Global Interoperability for Language Resources (ICGL 2008), Hong Kong SAR, January 9-11, 2008.
Ekaterina Buyko , Katrin Tomanek, and Udo Hahn. Resolution of coordination ellipses in biological named entities using conditional random fields. In PACLING 2007 -- Proceedings of the 10th Conference of the Pacific Association for Computational Linguistics , pages 163-171. Melbourne, Australia, September 19-21, 2007. Melbourne: Pacific Association for Computational Linguistics, 2007 .
Udo Hahn, Ekaterina Buyko , Katrin Tomanek, Scott Piao, John McNaught, Yoshimasa Tsuruoka, and Sophia Ananiadou. An annotation type system for a data-driven NLP pipeline. In The LAW at ACL 2007 - Proceedings of the Linguistic Annotation Workshop , pages 33-40. Prague, Czech Republic, June 28-29, 2007. Stroudsburg, PA: Association for Computational Linguistics, 2007.
Scott Piao, Ekaterina Buyko , Yoshimasa Tsuruoka, Katrin Tomanek, Jin-Dong Kim, John McNaught, Udo Hahn, Jian Su and Sophia Ananiadou. BootStrep annotation scheme - encoding information for text mining. In Proceedings of Corpus Linguistics Conference 2007 , Birmingham, UK, 27-30 July 2007.
Ekaterina Buyko , Joachim Wermter, Michael Poprat, and Udo Hahn. Automatically adapting an NLP core engine to the biology domain. In Hagit Shatkay, Lynette Hirschman, Alfonso Valencia, and Christian Blaschke, editors, Proceedings of the Joint BioLINK-Bio-Ontologies Meeting. A Joint Meeting of the ISMB Special Interest Group on Bio-Ontologies and the BioLINK Special Interest Group on Text Data Mining in Association with ISMB , pages 65-68. Fortaleza, Brazil, August 5, 2006, 2006.
Ekaterina Buyko. Numerische Repräsentation von Textcorpora für Wissensextraktion. In Sprachtechnologie, mobile Kommunikation und linguistische Ressourcen, Beiträge zur GLDV-Tagung 2005 in Bonn, Frankfurt am Main, Berlin, Bern, Bruxelles, New York, Oxford, Wien, 2005.
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